Associations detected between measures of neighborhood environmental conditions and human microbiome diversity

Journal article


Pearson, Amber L., Pechal, Jennifer, Lin, Zihan, Benbow, M. Eric, Schmidt, Carl and Mavoa, Suzanne. (2020). Associations detected between measures of neighborhood environmental conditions and human microbiome diversity. Science of the Total Environment. 745, p. 141029. https://doi.org/10.1016/j.scitotenv.2020.141029
AuthorsPearson, Amber L., Pechal, Jennifer, Lin, Zihan, Benbow, M. Eric, Schmidt, Carl and Mavoa, Suzanne
Abstract

While emerging research suggests urban green space revegetation increases soil microbiota diversity and native plant species affect skin microbiome diversity, there is still a paucity of knowledge on relationships between neighborhood environmental conditions and the human microbiome. This study leveraged data on human microbiome samples (nose, mouth, rectum) taken at autopsy at the Wayne County Medical Examiner's Office (2014–2015). We evaluated relationships between the microbiome and five measures of environmental conditions (NDVI standard deviation, NDVI mean, percent trees, percent grassland and soil type) near the home of 126 decedents. For the rectum microbiome, NDVI sd had negative, significant associations with diversity (ASVs β = −0.20, p = 0.045; Faith PD β = −0.22, p = 0.026). In contrast, while insignificant, there were consistent, positive associations between diversity and NDVI sd for the mouth microbiome (ASVs β = 0.09, p = 0.337, Faith PD β = 0.14, p = 0.149, Shannon diversity β = 0.14, p = 0.159, Heip's evenness β = 0.11, p = 0.259) and a significant association for the nose microbiome (eigenvalues 3 β = 0.18, p = 0.057). We found consistent, significant, negative associations between percent grassland and diversity of the nose microbiome (ASVs β = −0.25, p = 0.008, Faith PD β = −0.25, p = 0.009, Shannon diversity β = −0.17, p = 0.062). For the mouth microbiome, we found a small effect of percent trees on diversity (eigenvalues 1 β = −0.08, p = 0.053). Clay loam soil was negatively (eigenvalues 2 β = −0.47, p = 0.053) and positively associated (eigenvalues 3 β = 0.65, p = 0.008) with rectum microbiome diversity, compared to loam soil. There was no potential indicator taxon among NDVI quartiles. These findings may be relevant for urban planning and management of urban outdoor spaces in ways that may support healthy human microbiomes. Still, future research is needed to link variation in NDVI, vegetation, plant and/or soil microbe diversity and to confirm or negate our findings that environmental conditions may have contrasting influence on the microbiome of the rectum versus the nose and mouth and that grasslands affect the nose microbiome.

Keywordsneighborhoods; detroit; NDVI; urban; microbial communities; green space
Year2020
JournalScience of the Total Environment
Journal citation745, p. 141029
PublisherElsevier B.V.
ISSN0048-9697
Digital Object Identifier (DOI)https://doi.org/10.1016/j.scitotenv.2020.141029
PubMed ID32721621
Scopus EID2-s2.0-85088451850
Research or scholarlyResearch
Page range1-10
FunderNational Health and Medical Research Council (NHMRC)
Publisher's version
License
All rights reserved
File Access Level
Controlled
Output statusPublished
Publication dates
Online20 Jul 2020
Publication process dates
Accepted15 Jul 2020
Deposited12 Dec 2021
Grant IDNHMRC/1121035
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Children's Out-of-School Independently Mobile Trips, Active Travel, and Physical Activity: A Cross-Sectional Examination from the Kids in the City Study
Oliver, Melody, Parker, Karl, Witten, Karen, Mavoa, Suzanne, Badland, Hannah M., Donovan, Phil, Chaudhury, Moushumi and Kearns, Robin. (2016). Children's Out-of-School Independently Mobile Trips, Active Travel, and Physical Activity: A Cross-Sectional Examination from the Kids in the City Study. Journal of Physical Activity and Health. 13(3), pp. 318-324. https://doi.org/10.1123/jpah.2015-0043
Associations between the neighborhood environment and moderate-to-vigorous walking in New Zealand children : Findings from the URBAN Study
McGrath, Leslie J., Hinckson, Erica A., Hopkins, Will G., Mavoa, Suzanne, Witten, Karen and Schofield, Grant. (2016). Associations between the neighborhood environment and moderate-to-vigorous walking in New Zealand children : Findings from the URBAN Study. Sports Medicine. 46(7), pp. 1003-1017. https://doi.org/10.1007/s40279-016-0533-x
Active transport, physical activity, and distance between home and school in children and adolescents
Duncan, Scott, White, Kate, Mavoa, Suzanne, Stewart, Tom, Hinckson, Erica and Schofield, Grant. (2016). Active transport, physical activity, and distance between home and school in children and adolescents. Journal of Physical Activity and Health. 13(4), pp. 447-453. https://doi.org/10.1123/jpah.2015-0054
Neighbourhood built environment associations with body size in adults : mediating effects of activity and sedentariness in a cross-sectional study of New Zealand adults
Oliver, Melody, Witten, Karen, Blakely, Tony, Parker, Karl, Badland, Hannah, Schofield, Grant, Ivory, Vivienne, Pearce, Jamie, Mavoa, Suzanne, Hinckson, Erica, Sweetsur, Paul and Kearns, Robin. (2015). Neighbourhood built environment associations with body size in adults : mediating effects of activity and sedentariness in a cross-sectional study of New Zealand adults. BMC Public Health. 15, pp. 1-11. https://doi.org/10.1186/s12889-015-2292-2
Assessing neighbourhood destination access for children : Development of the NDAI-C audit tool
Badland, Hannah, Donovan, Phil, Mavoa, Suzanne, Oliver, Melody, Chaudhury, Moushumi and Witten, Karen. (2015). Assessing neighbourhood destination access for children : Development of the NDAI-C audit tool. Environment and Planning B: Urban Analytics and City Science. 42(6), pp. 1148-1160. https://doi.org/10.1068/b140009p
Age-friendly cities and communities : Access to services for older people
Lowen, Tamara, Davern, Melanie, Mavoa, Suzanne and Brasher, Kathleen. (2015). Age-friendly cities and communities : Access to services for older people. Australian Planner. 52(4), pp. 255-265. https://doi.org/10.1080/07293682.2015.1047874
The development of policy-relevant transport indicators to monitor health behaviours and outcomes
Badland, Hannah, Mavoa, Suzanne, Villanueva, Karen, Roberts, Rebecca, Davern, Melanie and Giles-Corti, Billie. (2015). The development of policy-relevant transport indicators to monitor health behaviours and outcomes. Journal of Transport and Health. 2(2), pp. 103-110. https://doi.org/10.1016/j.jth.2014.07.005
Developing indicators of public open space to promote health and wellbeing in communities
Villanueva, Karen, Badland, Hannah, Hooper, Paula, Koohsari, Mohammad, Mavoa, Suzanne, Davern, Melanie, Roberts, Rebecca, Goldfeld, Sharon and Giles-Corti, Billie. (2015). Developing indicators of public open space to promote health and wellbeing in communities. Applied Geography. 57, pp. 112-119. https://doi.org/10.1016/j.apgeog.2014.12.003
Associations between the neighbourhood built environment and out of school physical activity and active travel : An examination from the Kids in the City study
Oliver, Melody, Mavoa, Suzanne, Badland, Hannah, Parker, Karl, Donovan, Phil, Kearns, Robin, Lin, En-Yi and Witten, Karen. (2015). Associations between the neighbourhood built environment and out of school physical activity and active travel : An examination from the Kids in the City study. Health & Place. 36, pp. 57-64. https://doi.org/10.1016/j.healthplace.2015.09.005
Environmental and socio-demographic associates of children's active transport to school : a cross-sectional from the URBAN Study
Oliver, Melody, Badland, Hannah, Mavoa, Suzanne, Witten, Karen, Kearns, Robin, Ellaway, Anne, Hinckson, Erica, Mackay, Lisa and Schluter, Philip. (2014). Environmental and socio-demographic associates of children's active transport to school : a cross-sectional from the URBAN Study. International Journal of Behavioral Nutrition and Physical Activity. 11, pp. 1-12. https://doi.org/10.1186/1479-5868-11-70
Do low-income neighbourhoods have the least green space? A cross-sectional study of Australia's most populous cities
Astell-Burt, Thomas, Feng, Xiaoqi, Mavoa, Suzanne, Badland, Hannah and Giles-Corti, Billie. (2014). Do low-income neighbourhoods have the least green space? A cross-sectional study of Australia's most populous cities. BMC Public Health. 14, pp. 1-11. https://doi.org/10.1186/1471-2458-14-292
Distance to school is associated with sedentary time in children : findings from the URBAN study
Hinckson, Erica, McGrath, Les, Hopkins, Will, Oliver, Melody, Badland, Hannah, Mavoa, Suzanne, Witten, Karen and Kearns, Robin. (2014). Distance to school is associated with sedentary time in children : findings from the URBAN study. Frontiers in Public Health. 2, pp. 1-9. https://doi.org/10.3389/fpubh.2014.00151
Developing a research and practice tool to measure walkability : a demonstration project
Giles-Corti, Billie, Macaulay, Gus, Middleton, Nick, Boruff, Bryan, Bull, Fiona, Butterworth, Iain, Badland, Hannah, Mavoa, Suzanne, Roberts, Rebecca and Christian, Hayley. (2014). Developing a research and practice tool to measure walkability : a demonstration project. Health Promotion Journal of Australia. 25(3), pp. 160-166. https://doi.org/10.1071/HE14050
What constitutes a 'trip'? Examining child journey attributes using GPS and self-report
Oliver, Melody, Mavoa, Suzanne, Badland, Hannah, Carroll, Penelope, Asiasiga, Lanuola, Tavae, N, Kearns, Robin and Witten, Karen. (2014). What constitutes a 'trip'? Examining child journey attributes using GPS and self-report. Children's Geographies. 12(2), pp. 249-256. https://doi.org/10.1080/14733285.2014.890370
Utility of passive photography to objectively audit built environment features of active transport journeys : an observational study
Oliver, Melody, Doherty, Aiden, Kelly, Paul, Badland, Hannah, Mavoa, Suzanne, Shepherd, Janine, Kerr, Jacqueline, Marshall, Simon, Hamilton, Alexander and Foster, Charlie. (2013). Utility of passive photography to objectively audit built environment features of active transport journeys : an observational study. International Journal of Health Geographics. 12(20), pp. 1-7. https://doi.org/10.1186/1476-072X-12-20
Using simple agent-based modeling to inform and enhance neighborhood walkability
Badland, Hannah, White, Marcus, MacAulay, Gus, Eagleson, Serryn, Mavoa, Suzanne, Pettit, Christopher and Giles-Corti, Billie. (2013). Using simple agent-based modeling to inform and enhance neighborhood walkability. International Journal of Health Geographics. 12, pp. 1-10. https://doi.org/10.1186/1476-072X-12-58
Portable Global Positioning System Receivers : Static Validity and Environmental Conditions
Duncan, Scott, Stewart, Tom, Oliver, Melody, Mavoa, Suzanne, MacRae, Deborah, Badland, Hannah and Duncan, Mitch. (2013). Portable Global Positioning System Receivers : Static Validity and Environmental Conditions. American Journal of Preventive Medicine. 44(2), pp. 1-11. https://doi.org/10.1016/j.amepre.2012.10.013
Using SenseCam Images to Assess the Environment
Mavoa, Suzanne, Oliver, Melody, Kerr, Jacqueline, Doherty, Aiden and Witten, Karen. (2013). Using SenseCam Images to Assess the Environment. United States: Association for Computing Machinery. pp. 84 https://doi.org/10.1145/2526667.2526683
Neighborhood built environment and transport and leisure physical activity : findings using objective exposure and outcome measures in New Zealand
Witten, Karen, Blakely, Tony, Bagheri, Nasser, Badland, Hannah, Ivory, Vivienne, Pearce, Jamie, Mavoa, Suzanne, Hinckson, Erica and Schofield, Grant. (2012). Neighborhood built environment and transport and leisure physical activity : findings using objective exposure and outcome measures in New Zealand. Environmental Health Perspectives. 120(7), pp. 971-977. https://doi.org/10.1289/ehp.1104584
Association of neighbourhood residence and preferences with the built environment, work-related travel behaviours, and health implications for employed adults : Findings from the URBAN study
Badland, Hannah, Oliver, Melody, Kearns, Robin, Mavoa, Suzanne, Witten, Karen, Duncan, Mitch and Batty, G. David. (2012). Association of neighbourhood residence and preferences with the built environment, work-related travel behaviours, and health implications for employed adults : Findings from the URBAN study. Social Science and Medicine. 75(8), pp. 1469-1476. https://doi.org/10.1016/j.socscimed.2012.05.029
GIS based destination accessibility via public transit and walking in Auckland, New Zealand
Mavoa, Suzanne, Witten, Karen, McCreanor, Tim and O'Sullivan, David. (2012). GIS based destination accessibility via public transit and walking in Auckland, New Zealand. Journal of Transport Geography. 20(1), pp. 15-22. https://doi.org/10.1016/j.jtrangeo.2011.10.001
Linking GPS and travel diary data using sequence alignment in a study of children's independent mobility
Mavoa, Suzanne, Oliver, Melody, Witten, Karen and Badland, Hannah. (2011). Linking GPS and travel diary data using sequence alignment in a study of children's independent mobility. International Journal of Health Geographics. 10, pp. 1-10. https://doi.org/10.1186/1476-072X-10-64
Social and recreational travel : The destinations, travel modes and CO2 emissions of New Zealand households
Witten, Karen, Huakau, John and Mavoa, Suzanne. (2011). Social and recreational travel : The destinations, travel modes and CO2 emissions of New Zealand households. Social Policy Journal of New Zealand : te puna whakaaro. (37), pp. 1-13.
Kids in the city study : research design and methodology
Oliver, Melody, Witten, Karen, Kearns, Robin, Mavoa, Suzanne, Badland, Hannah, Carroll, Penelope, Drumheller, Chelsea, Tavae, Nicola, Asiasiga, Lanuola, Jelley, Su, Kaiwai, Hector, Opit, Simon, Lin, En-Yi, Sweetsur, Paul, Barnes, Helen, Mason, Nic and Ergler, Christina. (2011). Kids in the city study : research design and methodology. BMC Public Health. 11, pp. 1-12. https://doi.org/10.1186/1471-2458-11-587