Veronika Suni


NameVeronika Suni
Job titleBioinformatician/Computational Biologist
Research instituteMary MacKillop Institute for Health Research
Faculty of Health Sciences

Research outputs

Phosphoproteome and drug response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1
Kauko, Otto, Imanishi, Susumu Y., Kulesskiy, Evgeny, Yetukuri, Laxman, Laajala, Teemu Daniel, Sharma, Mukund, Pavic, Karolina, Aakula, Anna, Rupp, Christian, Jumppanen, Mikael, Haapaniemi, Pekka, Ruan, Luyao, Yadav, Bhagwan, Suni, Veronika, Varila, Taru, Corthals, Garry L., Reimand, Jüri, Wennerberg, Krister, Aittokallio, Tero and Westermarck, Jukka. (2020) Phosphoproteome and drug response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1. Journal of Biological Chemistry. 295(13), pp. 4194-4211. https://doi.org/10.1074/jbc.RA119.011265

Journal article

Reproducibility-optimized detection of differential DNA methylation
Suni, Veronika, Seyednasrollah, Fatemeh, Ghimire, Bishwa, Junttila, Sini, Laiho, Asta and Elo, Laura L.. (2020) Reproducibility-optimized detection of differential DNA methylation. Epigenomics. 12(9), pp. 1-9. https://doi.org/10.2217/epi-2019-0289

Journal article

Optimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites
Takai, Ayano, Tsubosaka, Tomoya, Hirano, Yasuhiro, Hayakawa, Naoki, Tani, Fumitaka, Haapaniemi, Pekka, Suni, Veronika and Imanishi, Susumu Y.. (2019) Optimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites. PLoS ONE. 14(12), pp. 1 - 16. https://doi.org/10.1371/journal.pone.0225885

Journal article

SimPhospho: a software tool enabling confident phosphosite assignment
Suni, Veronika, Suomi, Tomi, Tsubosaka, Tomoya, Imanishi, Susumu Y., Elo, Laura L. and Corthals, Garry L.. (2018) SimPhospho: a software tool enabling confident phosphosite assignment. Bioinformatics. 34(15), pp. 2690 - 2692. https://doi.org/10.1093/bioinformatics/bty151

Journal article

Confident site localization using a simulated phosphopeptide spectral library
Suni, Veronika, Imanishi, Susumu Y., Maiolica, Alessio, Aebersold, Ruedi and Corthals, Garry L.. (2015) Confident site localization using a simulated phosphopeptide spectral library. Journal of Proteome Research. 14(5), pp. 2348 - 2359. https://doi.org/10.1021/acs.jproteome.5b00050

Journal article

Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergetic RAS and CIP2A signaling
Kauko, Otto, Laajala, Teemu Daniel, Jumppanen, Mikael, Hintsanen, Petteri, Suni, Veronika, Haapaniemi, Pekka, Corthals, Garry, Aittokallio, Tero, Westermarck, Jukka and Imanishi, Susumu Y.. (2015) Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergetic RAS and CIP2A signaling. Scientific Reports. 5, pp. 1 - 17. https://doi.org/10.1038/srep13099

Journal article

Enrichment and sequencing of phosphopeptides on indium tin oxide coated glass slides
Kouvonen, Petri, Rainio, Eeva-Marja, Suni, Veronika, Koskinen, Päivi and Corthals, Garry L.. (2011) Enrichment and sequencing of phosphopeptides on indium tin oxide coated glass slides. Molecular Biosystems. 7(6), pp. 1828-1837. https://doi.org/10.1039/c0mb00269k

Journal article

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