Veronika Suni
| Contact category | Staff (past) |
|---|---|
| Job title | Bioinformatician/Computational Biologist |
| Research institute | Mary MacKillop Institute for Health Research |
| Faculty of Health Sciences |
Research outputs
Phosphoproteome and drug response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1
Kauko, Otto, Imanishi, Susumu Y., Kulesskiy, Evgeny, Yetukuri, Laxman, Laajala, Teemu Daniel, Sharma, Mukund, Pavic, Karolina, Aakula, Anna, Rupp, Christian, Jumppanen, Mikael, Haapaniemi, Pekka, Ruan, Luyao, Yadav, Bhagwan, Suni, Veronika, Varila, Taru, Corthals, Garry L., Reimand, Jüri, Wennerberg, Krister, Aittokallio, Tero and Westermarck, Jukka. (2020). Phosphoproteome and drug response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1. Journal of Biological Chemistry. 295(13), pp. 4194-4211. https://doi.org/10.1074/jbc.RA119.011265Journal article
Reproducibility-optimized detection of differential DNA methylation
Suni, Veronika, Seyednasrollah, Fatemeh, Ghimire, Bishwa, Junttila, Sini, Laiho, Asta and Elo, Laura L.. (2020). Reproducibility-optimized detection of differential DNA methylation. Epigenomics. 12(9), pp. 1-9. https://doi.org/10.2217/epi-2019-0289Journal article
Optimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites
Takai, Ayano, Tsubosaka, Tomoya, Hirano, Yasuhiro, Hayakawa, Naoki, Tani, Fumitaka, Haapaniemi, Pekka, Suni, Veronika and Imanishi, Susumu Y.. (2019). Optimization of TripleTOF spectral simulation and library searching for confident localization of phosphorylation sites. PLoS ONE. 14(12), pp. 1 - 16. https://doi.org/10.1371/journal.pone.0225885Journal article
SimPhospho: a software tool enabling confident phosphosite assignment
Suni, Veronika, Suomi, Tomi, Tsubosaka, Tomoya, Imanishi, Susumu Y., Elo, Laura L. and Corthals, Garry L.. (2018). SimPhospho: a software tool enabling confident phosphosite assignment. Bioinformatics. 34(15), pp. 2690 - 2692. https://doi.org/10.1093/bioinformatics/bty151Journal article
Confident site localization using a simulated phosphopeptide spectral library
Suni, Veronika, Imanishi, Susumu Y., Maiolica, Alessio, Aebersold, Ruedi and Corthals, Garry L.. (2015). Confident site localization using a simulated phosphopeptide spectral library. Journal of Proteome Research. 14(5), pp. 2348 - 2359. https://doi.org/10.1021/acs.jproteome.5b00050Journal article
Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergetic RAS and CIP2A signaling
Kauko, Otto, Laajala, Teemu Daniel, Jumppanen, Mikael, Hintsanen, Petteri, Suni, Veronika, Haapaniemi, Pekka, Corthals, Garry, Aittokallio, Tero, Westermarck, Jukka and Imanishi, Susumu Y.. (2015). Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergetic RAS and CIP2A signaling. Scientific Reports. 5, pp. 1 - 17. https://doi.org/10.1038/srep13099Journal article
Enrichment and sequencing of phosphopeptides on indium tin oxide coated glass slides
Kouvonen, Petri, Rainio, Eeva-Marja, Suni, Veronika, Koskinen, Päivi and Corthals, Garry L.. (2011). Enrichment and sequencing of phosphopeptides on indium tin oxide coated glass slides. Molecular Biosystems. 7(6), pp. 1828-1837. https://doi.org/10.1039/c0mb00269kJournal article
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