A comparative study of gradient nonlinearity correction strategies for processing diffusion data obtained with ultra-strong gradient MRI scanners

Journal article

Rudrapatna, Umesh, Parker, Greg D., Roberts, Jamie and Jones, Derek. (2020). A comparative study of gradient nonlinearity correction strategies for processing diffusion data obtained with ultra-strong gradient MRI scanners. Magnetic Resonance in Medicine. 85(2), pp. 1104-1113. https://doi.org/10.1002/mrm.28464
AuthorsRudrapatna, Umesh, Parker, Greg D., Roberts, Jamie and Jones, Derek
Abstract

Purpose
The analysis of diffusion data obtained under large gradient nonlinearities necessitates corrections during data reconstruction and analysis. While two such preprocessing pipelines have been proposed, no comparative studies assessing their performance exist. Furthermore, both pipelines neglect the impact of subject motion during acquisition, which, in the presence of gradient nonlinearities, induces spatio-temporal B-matrix variations. Here, spatio-temporal B-matrix tracking (STB) is proposed and its performance compared to established pipelines.

Methods
Diffusion tensor MRI (DT-MRI) was performed using a 300 mT/m gradient system. Data were acquired with volunteers positioned in regions with pronounced gradient nonlinearities, and used to compare the performance of six different processing pipelines, including STB.

Results
Up to 30% errors were observed in DT-MRI parameter estimates when neglecting gradient nonlinearities. Moreover, the order in which urn:x-wiley:07403194:media:mrm28464:mrm28464-math-0001 inhomogeneity, eddy current and gradient nonlinearity corrections were performed was found to impact the consistency of parameter estimates significantly. Although, no pipeline emerged as a clear winner, the STB approach seemed to yield the most consistent parameter estimates under large gradient nonlinearities.

Conclusions
Under large gradient nonlinearities, the choice of preprocessing pipeline significantly impacts the estimated diffusion parameters. Motion-induced spatio-temporal B-matrix variations can lead to systematic bias in the parameter estimates, that can be ameliorated using the proposed STB framework.

Keywordsconnectom; diffusion MRI; diffusion preprocessing; gradient nonlinearity; human connectome project; ultra-strong gradients
Year2020
JournalMagnetic Resonance in Medicine
Journal citation85 (2), pp. 1104-1113
PublisherJohn Wiley & Sons
ISSN0740-3194
Digital Object Identifier (DOI)https://doi.org/10.1002/mrm.28464
Scopus EID2-s2.0-85091864596
Open accessPublished as ‘gold’ (paid) open access
Publisher's version
License
File Access Level
Open
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Deposited21 May 2021
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Martinez-Murcia, Francisco Jesús, Lai, Meng-Chuan, Górriz, Juan Manuel, Ramírez, Javier, Young, Adam M. H., Deoni, Sean C. L., Ecker, Christine, Lombardo, Michael V., Baron-Cohen, Simon, Murphy, Declan G. M., Bullmore, Edward T., Suckling, John, Bailey, Anthony J., Baron-Cohen, Simon, Bolton, Patrick F., Bullmore, Edward T., Carrington, Sarah, Catani, Marco, Chakrabarti, Bhismadev, ... Williams, Steven C.. (2017). On the brain structure heterogeneity of autism: Parsing out acquisition site effects with significance-weighted principal component analysis. Human Brain Mapping. 38(3), pp. 1208 - 1223. https://doi.org/10.1002/hbm.23449
Improving the reliability of network metrics in structural brain networks by integrating different network weighting strategies into a single graph
Dimitriadis, Stavros I., Drakesmith, Mark, Bells, Sonya, Parker, Greg D., Linden, David E. and Jones, Derek K.. (2017). Improving the reliability of network metrics in structural brain networks by integrating different network weighting strategies into a single graph. Frontiers in Neuroscience. 11, pp. 1 - 17. https://doi.org/10.3389/fnins.2017.00694
Topographic separation of fornical fibers associated with the anterior and posterior hippocampus in the human brain: An MRI-diffusion study
Christiansen, Kat, Metzler-Baddeley, Claudia, Parker, Greg D., Muhlert, Nils, Jones, Derek K., Aggleton, John P. and Vann, Seralynne D.. (2017). Topographic separation of fornical fibers associated with the anterior and posterior hippocampus in the human brain: An MRI-diffusion study. Brain and Behavior. 7(1), pp. 1 - 8. https://doi.org/10.1002/brb3.604
Shared and disorder-specific neurocomputational mechanisms of decision-making in autism spectrum disorder and obsessive-compulsive disorder
Carlisi, Christina O., Norman, Luke, Murphy, Clodagh M., Christakou, Anastasia, Chantiluke, Kaylita, Giampietro, Vincent, Simmons, Andrew, Brammer, Michael, Murphy, Declan G., Mataix-Cols, David, Rubia, Katya, Bailey, A. J., Baron-Cohen, S., Bolton, P. F., Bullmore, E. T., Carrington, S., Chakrabarti, B., Daly, E. M., Deoni, S. C., ... Williams, S. C.. (2017). Shared and disorder-specific neurocomputational mechanisms of decision-making in autism spectrum disorder and obsessive-compulsive disorder. Cerebral Cortex. 27(12), pp. 5804-5816. https://doi.org/10.1093/cercor/bhx265
Interactive computation and visualization of structural connectomes in real-time
Chamberland, Maxime, Gray, Liam, Descoteaux, Maxime and Jones, Derek. (2017). Interactive computation and visualization of structural connectomes in real-time. In G. Wu, P. Laurienti and L. Bonilha (Ed.). First International Workshop, CNI 2017. United States of America: Springer. pp. 1 - 7 https://doi.org/10.1007/978-3-319-67159-8
Dynamics of white matter plasticity underlying working memory training: multimodal evidence from diffusion MRI and relaxometry
Metzler-Baddeley, Claudia, Foley, Sonya, de Santis, Silvia, Charron, Cyril, Hampshire, Adam, Caeyenberghs, Karen and Jones, Derek Kenton. (2017). Dynamics of white matter plasticity underlying working memory training: multimodal evidence from diffusion MRI and relaxometry. Journal of Cognitive Neuroscience. 29(9), pp. 1509 - 1520. https://doi.org/10.1162/jocn_a_01127
Volumetric, relaxometric and diffusometric correlates of psychotic experiences in a non-clinical sample of young adults
Drakesmith, Mark, Dutt, Anirban, Fonville, Leon, Zammit, Stanley, Reichenberg, Abraham, Evans, C. John, McGuire, Philip K., Lewis, Glyn, Jones, Derek Kenton and David, Anthony S.. (2016). Volumetric, relaxometric and diffusometric correlates of psychotic experiences in a non-clinical sample of young adults. NeuroImage: Clinical. 12, pp. 550 - 558. https://doi.org/10.1016/j.nicl.2016.09.002
Mediation of developmental risk factors for psychosis by white matter microstructure in young adults with psychotic experiences
Drakesmith, Mark, Dutt, Anirban, Fonville, Leon, Zammit, Stanley, Reichenberg, Abraham, Evans, C. John, Lewis, Glyn, Jones, Derek Kenton and David, Anthony S.. (2016). Mediation of developmental risk factors for psychosis by white matter microstructure in young adults with psychotic experiences. JAMA Psychiatry. 73(4), pp. 396 - 406. https://doi.org/10.1001/jamapsychiatry.2015.3375
Myelination of the right parahippocampal cingulum is associated with physical activity in young healthy adults
Bracht, Tobias, Jones, Derek K., Bells, Sonya, Walther, Sebastian, Drakesmith, Mark and Linden, David. (2016). Myelination of the right parahippocampal cingulum is associated with physical activity in young healthy adults. Brain Structure and Function. 221(9), pp. 4537 - 4548. https://doi.org/10.1007/s00429-016-1183-3
Dynamics of the human structural connectome underlying working memory training
Caeyenberghs, Karen, Metzler-Baddeley, Claudia, Foley, Sonya and Jones, Derek Kenton. (2016). Dynamics of the human structural connectome underlying working memory training. The Journal of Neuroscience. 36(14), pp. 4056 - 4066. https://doi.org/10.1523/JNEUROSCI.1973-15.2016
Frontal networks in adults with autism spectrum disorder
Catani, Marco, Dell'Acqua, Flavio, Budisavljevic, Sanja, Howells, Henrietta, de Schotten, Michel Thiebaut, Froudist-Walsh, Seán, D'Anna, Lucio, Thompson, Abigail, Sandrone, Stefano, Bullmore, Edward T., Suckling, John, Baron-Cohen, Simon, Lombardo, Michael V., Wheelwright, Sally J., Chakrabarti, Bhismadev, Lai, Meng-Chuan, Ruigrok, Amber N. V., Leemans, Alexander, Ecker, Christine, ... Williams, Steven C.. (2016). Frontal networks in adults with autism spectrum disorder. Brain. 139(2), pp. 616 - 630. https://doi.org/10.1093/brain/awv351
White matter microstructure and cognitive function in young women with polycystic ovary syndrome
Rees, D. Aled, Udiawar, Maneesh, Berlot, Rok, Jones, Derek Kenton and O'Sullivan, Michael J.. (2016). White matter microstructure and cognitive function in young women with polycystic ovary syndrome. The Journal of Clinical Endocrinology and Metabolism. 101(1), pp. 314 - 323. https://doi.org/10.1210/jc.2015-2318
Subgenual cingulum microstructure supports control of emotional conflict
Keedwell, Paul A., Doidge, Amie N., Meyer, Marcel, Lawrence, Natalia, Lawrence, Andrew D. and Jones, Derek K.. (2016). Subgenual cingulum microstructure supports control of emotional conflict. Cerebral Cortex. 26(6), pp. 2850 - 2862. https://doi.org/10.1093/cercor/bhw030
Robust MR-based approaches to quantifying white matter structure and structure/function alterations in Huntington's disease
Steventon, Jessica J., Trueman, Rebecca C., Rosser, Anne E. and Jones, Derek Kenton. (2016). Robust MR-based approaches to quantifying white matter structure and structure/function alterations in Huntington's disease. Journal of Neuroscience Methods. 265, pp. 2 - 12. https://doi.org/10.1016/j.jneumeth.2015.08.027
Relationships between cortical myeloarchitecture and electrophysiological networks
Hunt, Benjamin A. E., Tewarie, Prejaas K., Mougin, Olivier E., Geades, Nicolas, Jones, Derek, Singh, Krish D., Morris, Peter G., Gowland, Penny A. and Brookes, Matthew J.. (2016). Relationships between cortical myeloarchitecture and electrophysiological networks. Proceedings of the National Academy of Sciences of USA. 113(47), pp. 13510 - 13515. https://doi.org/10.1073/pnas.1608587113
Task complexity and location specific changes of cortical thickness in executive and salience networks after working memory training
Metzler-Baddeley, Claudia, Caeyenberghs, Karen, Foley, Sonya and Jones, Derek Kenton. (2016). Task complexity and location specific changes of cortical thickness in executive and salience networks after working memory training. NeuroImage. 130, pp. 48 - 62. https://doi.org/10.1016/j.neuroimage.2016.01.007
Longitudinal data on cortical thickness before and after working memory training
Metzler-Baddeley, Claudia, Caeyenberghs, Karen, Foley, Sonya and Jones, Derek Kenton. (2016). Longitudinal data on cortical thickness before and after working memory training. Data in Brief. 7, pp. 1143 - 1147. https://doi.org/10.1016/j.dib.2016.03.090
Including diffusion time dependence in the extra-axonal space improves in vivo estimates of axonal diameter and density in human white matter
De Santis, Silvia, Jones, Derek Kenton and Roebroeck, Alard. (2016). Including diffusion time dependence in the extra-axonal space improves in vivo estimates of axonal diameter and density in human white matter. NeuroImage. 130, pp. 91 - 103. https://doi.org/10.1016/j.neuroimage.2016.01.047
T1 relaxometry of crossing fibres in the human brain
De Santis, Silvia, Assaf, Yaniv, Jeurissen, Ben, Jones, Derek Kenton and Roebroeck, Alard. (2016). T1 relaxometry of crossing fibres in the human brain. NeuroImage. 141, pp. 133 - 142. https://doi.org/10.1016/j.neuroimage.2016.07.037
Understanding factors that facilitate the inclusion of pain education in undergraduate curricula: perspectives from a UK survey
Carr, Eloise C.J., Briggs, Emma V., Briggs, Michelle, Allcock, Nick, Black, Pauline and Jones, Derek. (2016). Understanding factors that facilitate the inclusion of pain education in undergraduate curricula: perspectives from a UK survey. British Journal of Pain. 10(2), pp. 100 - 107. https://doi.org/10.1177/2049463716634377
Resolving relaxometry and diffusion properties within the same voxel in the presence of crossing fibres by combining inversion recovery and diffusion-weighted acquisitions
Santis, Silvia De, Barazany, Daniel, Jones, Derek K. and Assaf, Yaniv. (2016). Resolving relaxometry and diffusion properties within the same voxel in the presence of crossing fibres by combining inversion recovery and diffusion-weighted acquisitions. Magnetic Resonance in Medicine. 75(1), pp. 372 - 380. https://doi.org/10.1002/mrm.25644
Simultaneous parameter mapping, modality synthesis, and anatomical labeling of the brain with MR fingerprinting
Gomez, Pedro A., Molina-Romero, Miguel, Ulas, Cagdas, Bounincontri, Guido, Sperl, Jonathan I., Jones, Derek, Menzel, Marion I. and Menze, Bjoern H.. (2016). Simultaneous parameter mapping, modality synthesis, and anatomical labeling of the brain with MR fingerprinting. In L. Joskowicz, M. R. Sabuncu and W. Wells, G. Unal and S. Ourselin (Ed.). International Conference on Medical Image Computing and Computer-Assisted Intervention. Germany: Springer-Verlag. pp. 579 - 586 https://doi.org/10.1007/978-3-319-46726-9_67
Longitudinal in vivo MRI in a Huntington's disease mouse model: Global atrophy in the absence of white matter microstructural damage
Steventon, Jessica J., Trueman, Rebecca C., Ma, Da, Yhnell, Emma, Bayram-Weston, Zubeyde, Modat, Marc, Cardoso, Jorge, Ourselin, Sebastian, Lythgoe, Mark, Stewart, Andrew, Rosser, Anne E. and Jones, Derek Kenton. (2016). Longitudinal in vivo MRI in a Huntington's disease mouse model: Global atrophy in the absence of white matter microstructural damage. Scientific Reports. 6, pp. 1 - 12. https://doi.org/10.1038/srep32423
Relationship between cortical gyrification, white matter connectivity, and autism spectrum disorder
Ecker, C., Andrews, D., Dell'Acqua, F., Daly, E., Murphy, C., Catani, M., Thiebaut de Schotten, M., Baron-Cohen, S., Lai, M. C., Lombardo, M. V., Bullmore, E. T., Suckling, J., Williams, S., Jones, D. K., Chiocchetti, A., MRC AIMS Consortium and Murphy, D. G. M.. (2016). Relationship between cortical gyrification, white matter connectivity, and autism spectrum disorder. Cerebral Cortex. 26(7), pp. 3297-3309. https://doi.org/10.1093/cercor/bhw098
Global efficiency of structural networks mediates cognitive control in mild cognitive impairment
Berlot, Rok, Metzler-Baddeley, Claudia, Ikram, M. Arfan, Jones, Derek Kenton and O'Sullivan, Michael J.. (2016). Global efficiency of structural networks mediates cognitive control in mild cognitive impairment. Frontiers in Aging Neuroscience. 8, pp. 1 - 11. https://doi.org/10.3389/fnagi.2016.00292
Cholinergic basal forebrain structure influences the reconfiguration of white matter connections to support residual memory in mild cognitive impairment
Ray, Nicola J., Metzler-Baddeley, Claudia, Khondoker, Mizanur R., Grothe, Michel J., Teipel, Stefan, Wright, Paul, Heinsen, Helmut, Jones, Derek Kenton, Aggleton, John P. and O'Sullivan, Michael J.. (2015). Cholinergic basal forebrain structure influences the reconfiguration of white matter connections to support residual memory in mild cognitive impairment. Journal of Neuroscience. 35(2), pp. 739 - 747. https://doi.org/10.1523/JNEUROSCI.3617-14.2015
Limbic white matter microstructure plasticity reflects recovery from depression
Bracht, Tobias, Jones, Derek Kenton, Müller, Thomas J., Wiest, Roland and Walther, Sebastian. (2015). Limbic white matter microstructure plasticity reflects recovery from depression. Journal of Affective Disorders. 170, pp. 143 - 149. https://doi.org/10.1016/j.jad.2014.08.031
In vivo mri evidence that neuropathology is attenuated by cognitive enrichment in the yac128 huntington's disease mouse model
Steventon, Jessica J., Harrison, David J., Trueman, Rebecca C., Rosser, Anne E., Jones, Derek and Brooks, Simon P.. (2015). In vivo mri evidence that neuropathology is attenuated by cognitive enrichment in the yac128 huntington's disease mouse model. Journal of Huntington's Disease (print). 4(2), pp. 149 - 160. https://doi.org/10.3233/JHD-150147
Dissociable roles of the inferior longitudinal fasciculus and fornix in face and place perception
Hodgetts, Carl J., Postans, Mark, Shine, Jonathan P., Jones, Derek Kenton, Lawrence, Andrew D. and Graham, Kim S.. (2015). Dissociable roles of the inferior longitudinal fasciculus and fornix in face and place perception. eLife. 4, pp. 1 - 25. https://doi.org/10.7554/eLife.07902
Exploring neural dysfunction in 'clinical high risk' for psychosis: A quantitative review of fMRI studies
Dutt, Anirban, Tseng, Huai Hsuan, Fonville, Leon, Drakesmith, Mark, Su, Liang, Evans, John, Zammit, Stanley, Jones, Derek Kenton, Lewis, Glyn and David, Anthony S.. (2015). Exploring neural dysfunction in 'clinical high risk' for psychosis: A quantitative review of fMRI studies. Journal of Psychiatric Research. 61, pp. 122 - 134. https://doi.org/10.1016/j.jpsychires.2014.08.018
Decreased centrality of cortical volume covariance networks in autism spectrum disorders
Balardin, Joana Bisol, Comfort, William Edgar, Daly, Eileen M., Murphy, Clodagh M., Andrews, D., Murphy, Declan G. M., Ecker, Christine, Sato, João Ricardo, Bailey, Anthony J., Baron-Cohen, S., Bolton, Patrick F., Bullmore, E. T., Carrington, Sarah, Catani, Marco, Chakrabarti, B., Craig, Michael C., Daly, E. M., Deoni, Sean C. L., Happé, Francesca, ... Wilson, Ellie. (2015). Decreased centrality of cortical volume covariance networks in autism spectrum disorders. Journal of Psychiatric Research. 69, pp. 142 - 149. https://doi.org/10.1016/j.jpsychires.2015.08.003
Obsessive-compulsive disorder in adults with high-functioning autism spectrum disorder : What does self-report with the OCI-R tell us?
Cadman, Tim, Spain, Debbie, Johnston, Patrick, Russell, Ailsa, Mataix-Cols, David, Craig, Michael, Deeley, Quinton, Robertson, Dene, Murphy, Clodagh, Gillan, Nicola, Wilson, C. Ellie, Mendez, Maria, Ecker, Christine, Daly, Eileen, Findon, James, Glaser, Karen, Bailey, A. J., Baron-Cohen, S., Bolton, P. F., ... Murphy, Declan. (2015). Obsessive-compulsive disorder in adults with high-functioning autism spectrum disorder : What does self-report with the OCI-R tell us? Autism Research. 8(5), pp. 477-485. https://doi.org/10.1002/aur.1461
Schizophrenia-like topological changes in the structural connectome of individuals with subclinical psychotic experiences
Drakesmith, Mark, Caeyenberghs, Karen, Dutt, Anirban, Zammit, Stanley, Evans, C John, Reichenberg, Abraham, Lewis, Glyn, David, Anthony and Jones, Derek. (2015). Schizophrenia-like topological changes in the structural connectome of individuals with subclinical psychotic experiences. Human Brain Mapping. 36(7), pp. 2629 - 2643. https://doi.org/10.1002/hbm.22796
Relationship between surface-based brain morphometric measures and intelligence in autism spectrum disorders: Influence of history of language delay
Balardin, Joana Bisol, Sato, João Ricardo, Vieira, Gilson, Feng, Yeu, Daly, Eileen M., Murphy, Clodagh M., Bailey, Anthony J., Carrington, Sarah, Jezzard, Peter, Stewart, Rose, Baron-Cohen, Simon, Bullmore, Edward T., Chakrabarti, Bhismadev, Henty, Julian, Lai, Meng Chuan, Lombardo, Michael V., Pasco, Greg, Ruigrok, Amber N. V., Sadek, Susan A., ... Wilson, C. Ellie. (2015). Relationship between surface-based brain morphometric measures and intelligence in autism spectrum disorders: Influence of history of language delay. Autism Research. 8(5), pp. 556 - 566. https://doi.org/10.1002/aur.1470
Emotion regulation deficits in euthymic bipolar I versus bipolar II disorder: A functional and diffusion-tensor imaging study
Caseras, Xavier, Murphy, Kevin, Lawrence, Natalia S., Fuentes-Claramonte, Paola, Watts, Jessica, Jones, Derek Kenton and Phillips, Mary L.. (2015). Emotion regulation deficits in euthymic bipolar I versus bipolar II disorder: A functional and diffusion-tensor imaging study. Bipolar Disorders. 17(5), pp. 461 - 470. https://doi.org/10.1111/bdi.12292
ADHD severity is associated with white matter microstructure in the subgenual cingulum
Cooper, Miriam, Thapar, Anita and Jones, Derek Kenton. (2015). ADHD severity is associated with white matter microstructure in the subgenual cingulum. NeuroImage: Clinical. 7, pp. 653 - 660. https://doi.org/10.1016/j.nicl.2015.02.012
Hedonic tone is associated with left supero-lateral medial forebrain bundle microstructure
Bracht, Tobias, Doidge, Amie N., Keedwell, Paul A. and Jones, Derek Kenton. (2015). Hedonic tone is associated with left supero-lateral medial forebrain bundle microstructure. Psychological Medicine. 45(4), pp. 865 - 874. https://doi.org/10.1017/S0033291714001949
Psychotic experiences, working memory, and the developing brain: A multimodal neuroimaging study
Fonville, Leon, Kadosh, Kathrin Cohen, Drakesmith, Mark, Dutt, Anirban, Zammit, Stanley, Mollon, Josephine, Reichenberg, Abraham, Lewis, Glyn, Jones, Derek K. and David, Anthony S.. (2015). Psychotic experiences, working memory, and the developing brain: A multimodal neuroimaging study. Cerebral Cortex. 25(12), pp. 4828 - 4838. https://doi.org/10.1093/cercor/bhv181
White-matter relaxation time and myelin water fraction differences in young adults with autism
Deoni, S. C. L., Zinkstok, J. R., Daly, E., Ecker, C., Willia, Steven C., Murphy, Declan, Bailey, Anthony J., Baron-Cohen, Simon, Bolton, Patrick F., Bullmore, E. T., Carrington, Sarah, Chakrabarti, B., Daly, E. M., Deoni, Sean C. L., Ecker, C., Happe, F., Henty, J., Jezzard, P., Johnston, P., ... Murphy, D. G. M.. (2015). White-matter relaxation time and myelin water fraction differences in young adults with autism. Psychological Medicine. 45(4), pp. 795-805. https://doi.org/10.1017/S0033291714001858
Hyperconnectivity in juvenile myoclonic epilepsy: A network analysis
Caeyenberghs, Karen, Powell, H., Thomas, Rhys, Brindley, Lisa, Church, Carla, Evans, John, Muthukumaraswamy, Suresh, Jones, Derek and Hamandi, Khalid. (2015). Hyperconnectivity in juvenile myoclonic epilepsy: A network analysis. NeuroImage: Clinical. 7, pp. 98 - 104. https://doi.org/10.1016/j.nicl.2014.11.018
"I try and smile, I try and be cheery, I try not to be pushy. I try to say 'I'm here for help' but I leave feeling... Worried": A qualitative study of perceptions of interactions with health professionals by community-based older adults with chronic pain
Clarke, Amanda, Martin, Denis, Jones, Derek, Schofield, Patricia, Anthony, Geraldine, McNamee, Paul, Gray, Denise and Smith, Blair H.. (2014). "I try and smile, I try and be cheery, I try not to be pushy. I try to say 'I'm here for help' but I leave feeling... Worried": A qualitative study of perceptions of interactions with health professionals by community-based older adults with chronic pain. PLoS ONE. 9(9), pp. 1 - 7. https://doi.org/10.1371/journal.pone.0105450
Systematically searching for and assessing the literature for self-management of chronic pain: A lay users' perspective
Schofield, Pat, Smith, Blair H., Martin, Denis, Jones, Derek, Clarke, Amanda, McNamee, Paul, Marsh, Ron, Morrison, Michael, Morrison, Rosemary, Fowler, Sheena, Anthony, Geraldine and Stewart, Carrie. (2014). Systematically searching for and assessing the literature for self-management of chronic pain: A lay users' perspective. BMC Geriatrics. 14(1), pp. 1 - 8. https://doi.org/10.1186/1471-2318-14-86
Abnormal functional activation and maturation of fronto-striato-temporal and cerebellar regions during sustained attention in autism spectrum disorder
Murphy, Clodagh M., Christakou, Anastasia, Daly, Eileen M., Ecker, Christine, Giampietro, Vincent, Brammer, Michael, Smith, Anna B., Johnston, Patrick, Robertson, Dene M., Bailey, A. J., Baron-Cohen, S., Bolton, P. F., Bullmore, E. T., Carrington, S., Chakrabarti, B., Daly, E. M., Deoni, S. C., Ecker, C., Happe, F., ... Rubia, Katya. (2014). Abnormal functional activation and maturation of fronto-striato-temporal and cerebellar regions during sustained attention in autism spectrum disorder. American Journal of Psychiatry. 171(10), pp. 1107-1116. https://doi.org/10.1176/appi.ajp.2014.12030352
Why diffusion tensor MRI does well only some of the time: Variance and covariance of white matter tissue microstructure attributes in the living human brain
De Santis, Silvia, Drakesmith, Mark, Bells, Sonya, Assaf, Yaniv and Jones, Derek Kenton. (2014). Why diffusion tensor MRI does well only some of the time: Variance and covariance of white matter tissue microstructure attributes in the living human brain. NeuroImage. 89, pp. 35 - 44. https://doi.org/10.1016/j.neuroimage.2013.12.003
Improved executive function and callosal white matter microstructure after rhythm exercise in huntington's disease
Metzler-Baddeley, Claudia, Cantera, Jaime, Coulthard, Elizabeth, Rosser, Anne E., Jones, Derek and Baddeley, Roland J.. (2014). Improved executive function and callosal white matter microstructure after rhythm exercise in huntington's disease. Journal of Huntington's Disease (print). 3(3), pp. 273 - 283. https://doi.org/10.3233/JHD-140113
The neuropsychology of male adults with high-functioning autism or Asperger Syndrome
Wilson, C. Ellie, Happé, Francesca, Wheelwright, Sally J., Ecker, Christine, Lombardo, Michael V., Johnston, Patrick, Daly, Eileen, Murphy, Clodagh M., Spain, Debbie, Lai, Meng Chuan, Chakrabarti, B., Sauter, Disa A., Baron-Cohen, S., Murphy, Declan, Bailey, Anthony J., Bolton, Patrick F., Bullmore, E. T., Carrington, Sarah, Catani, Marco, ... Williams, Steven C.. (2014). The neuropsychology of male adults with high-functioning autism or Asperger Syndrome. Autism Research: official journal of the International Society for Autism Research. 7(5), pp. 568 - 581. https://doi.org/10.1002/aur.1394
CSF contamination contributes to apparent microstructural alterations in mild cognitive impairment
Berlot, Rok, Metzler-Baddeley, Claudia, Jones, Derek Kenton and O'Sullivan, Michael J.. (2014). CSF contamination contributes to apparent microstructural alterations in mild cognitive impairment. NeuroImage. 92, pp. 27 - 35. https://doi.org/10.1016/j.neuroimage.2014.01.031
White Matter Microstructure Predicts Autistic Traits in Attention-Deficit/Hyperactivity Disorder
Cooper, Miriam, Thapar, Anita and Jones, Derek Kenton. (2014). White Matter Microstructure Predicts Autistic Traits in Attention-Deficit/Hyperactivity Disorder. Journal of Autism and Developmental Disorders. 44(11), pp. 2742 - 2754. https://doi.org/10.1007/s10803-014-2131-9
Interindividual variation in fornix microstructure and macrostructure is related to visual discrimination accuracy for scenes but not faces
Postans, Mark, Hodgetts, Carl J., Mundy, Matthew E., Jones, Derek Kenton, Lawrence, Andrew D. and Graham, Kim S.. (2014). Interindividual variation in fornix microstructure and macrostructure is related to visual discrimination accuracy for scenes but not faces. Journal of Neuroscience. 34(36), pp. 12121 - 12126. https://doi.org/10.1523/JNEUROSCI.0026-14.2014
Tractometry and the hunt for the missing link: A physicist perspective
Jones, Derek and Nilsson, Markus. (2014). Tractometry and the hunt for the missing link: A physicist perspective. In M. Home, M. Lindgren and M. Nilsson, M. Roll, Y. Shtyrov, F. Stahlberg and D. Topgaard (Ed.). Microstructures of Learning: Novel methods and approaches for assessing structural and functional changes underlying knowledge acquisition in the brain. Sweden: Lund University Press. pp. 38 - 48 https://doi.org/10.3389/978-2-88919-480-3
Cost-effectiveness of self-management methods for the treatment of chronic pain in an aging adult population : A systematic review of the literature
Boyers, Dwayne, McNamee, Paul, Clarke, Amanda, Jones, Derek, Martin, Denis, Schofield, Pat and Smith, Blair H.. (2013). Cost-effectiveness of self-management methods for the treatment of chronic pain in an aging adult population : A systematic review of the literature. Clinical Journal of Pain. 29(4), pp. 366-375. https://doi.org/10.1097/AJP.0b013e318250f539
Understanding twitter
Maclean, Fiona, Jones, Derek, Carin-Levy, Gail and Hunter, Heather. (2013). Understanding twitter. British Journal of Occupational Therapy. 76(6), pp. 295 - 298. https://doi.org/10.4276/030802213X13706169933021
Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging
Jeurissen, Ben, Leemans, Alexander, Tournier, Jacques Donald, Jones, Derek Kenton and Sijbers, Jan. (2013). Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging. Human Brain Mapping. 34(11), pp. 2747 - 2766. https://doi.org/10.1002/hbm.22099
Individual differences in fornix microstructure and body mass index
Metzler-Baddeley, Claudia, Baddeley, Roland J., Jones, Derek K., Aggleton, John P. and O'Sullivan, Michael J.. (2013). Individual differences in fornix microstructure and body mass index. PLoS ONE. 8(3), pp. 1 - 8. https://doi.org/10.1371/journal.pone.0059849
Distinct subdivisions of the cingulum bundle revealed by diffusion MRI fibre tracking: Implications for neuropsychological investigations
Jones, Derek Kenton, Christiansen, Kat F., Chapman, R. J. and Aggleton, John P.. (2013). Distinct subdivisions of the cingulum bundle revealed by diffusion MRI fibre tracking: Implications for neuropsychological investigations. Neuropsychologia. 51(1), pp. 67 - 78. https://doi.org/10.1016/j.neuropsychologia.2012.11.018
A pitfall in the reconstruction of fibre ODFs using spherical deconvolution of diffusion MRI data
Parker, G. D., Marshall, David, Rosin, P. L., Drage, N., Richmond, S. and Jones, Derek Kenton. (2013). A pitfall in the reconstruction of fibre ODFs using spherical deconvolution of diffusion MRI data. NeuroImage. 65, pp. 433 - 448. https://doi.org/10.1016/j.neuroimage.2012.10.022
The CONNECT project: Combining macro- and micro-structure
Assaf, Yaniv, Alexander, Daniel C., Jones, Derek Kenton, Bizzi, Albero, Behrens, Tim E. J., Clark, Chris A., Cohen, Yoram, Dyrby, Tim B., Huppi, Petra S., Knoesche, Thomas R., LeBihan, Denis, Parker, Geoff J. M., Poupon, Cyril, Anaby, Debbie, Anwander, Alfred, Bar, Leah, Barazany, Daniel, Blumenfeld-Katzir, Tamar, De Santis, Silvia, ... Zhou, Feng-Lei. (2013). The CONNECT project: Combining macro- and micro-structure. NeuroImage. 80, pp. 273 - 282. https://doi.org/10.1016/j.neuroimage.2013.05.055
Guidance on the management of pain in older people
Abdulla, Aza, Adams, Nicola, Bone, Margaret, Elliott, Alison M., Gaffin, Jean, Jones, Derek, Knaggs, Roger, Martin, Denis, Sampson, Liz and Schofield, Pat. (2013). Guidance on the management of pain in older people. Age and Ageing. 42(Supplement 1), pp. i1 - i57. https://doi.org/10.1093/ageing/afs200
Detailing patient specific modelling to aid clinical decision-making
Richmond, S., Al Ali, A. M., Beldie, L., Chong, Y. T., Cronin, A., Djordjevic, J., Drage, N. A., Evans, D. M., Jones, D., Lu, Y., Marshall, D., Middleton, J., Parker, G., Paternoster, L., Playle, R. A., Popat, H., Rosin, P. L., Sidorov, K., Toma, A. M., ... Zhurov, A. I.. (2012). Detailing patient specific modelling to aid clinical decision-making. In In Calvo Lopez, Begoña and Peña, Estefanía (Ed.). Patient-specific computational modeling pp. 105-131 Springer. https://doi.org/10.1007/978-94-007-4552-0_5
Neuroplasticity and functional recovery in multiple sclerosis
Tomassini, Valentina, Matthews, Paul M., Thompson, Alan J., Fuglo, Daniel, Geurts, Jeroen J., Johansen-Berg, Heidi, Jones, Derek Kenton, Rocca, Maria A., Wise, Richard G., Barkhof, Frederik and Palace, Jacqueline. (2012). Neuroplasticity and functional recovery in multiple sclerosis. Nature Reviews Neurology. 8(11), pp. 635 - 646. https://doi.org/10.1038/nrneurol.2012.179
Cortical network for gaze control in humans revealed using multimodal MRI
Anderson, Elaine J., Jones, Derek K., O'Gorman, Ruth L., Leemans, Alexander, Catani, Marco and Husain, Masud. (2012). Cortical network for gaze control in humans revealed using multimodal MRI. Cerebral Cortex. 22(4), pp. 765 - 775. https://doi.org/10.1093/cercor/bhr110
"I feel so stupid because I can't give a proper answer…" How older adults describe chronic pain: A qualitative study
Clarke, Amanda, Anthony, Geraldine, Gray, Denise, Jones, Derek, McNamee, Paul, Schofield, Pat, Smith, Blair H. and Martin, Denis. (2012). "I feel so stupid because I can't give a proper answer…" How older adults describe chronic pain: A qualitative study. BMC Geriatrics. 12(78), pp. 1 - 8. https://doi.org/10.1186/1471-2318-12-78
Using the biophysical CHARMED model to elucidate the underpinnings of contrast in diffusional kurtosis analysis of diffusion-weighted MRI
De Santis, Silvia, Assaf, Yaniv and Jones, Derek K.. (2012). Using the biophysical CHARMED model to elucidate the underpinnings of contrast in diffusional kurtosis analysis of diffusion-weighted MRI. Magnetic Resonance Materials in Physics, Biology and Medicine. 25(4), pp. 267 - 276. https://doi.org/10.1007/s10334-011-0292-5
Cognition in males and females with autism: Similarities and differences
Lai, Meng C., Lombardo, M. V., Ruigrok, Amber N. V., Chakrabarti, B., Wheelwright, Sally J., Auyeung, B., Allison, Carrie, Bailey, Anthony J., Baron-Cohen, S., Bolton, Patrick F., Bullmore, E. T., Carrington, Sarah, Catani, Marco, Craig, Michael C., Daly, E. M., Deoni, Sean C. L., Ecker, Christine, Happé, Francesca, Henty, Julian, ... Baron-Cohen, Simon. (2012). Cognition in males and females with autism: Similarities and differences. PLoS ONE. 7(10), pp. 1 - 15. https://doi.org/10.1371/journal.pone.0047198
Cingulum microstructure predicts cognitive control in older age and mild cognitive impairment
Metzler-Baddeley, Claudia, Jones, Derek Kenton, Steventon, Jessica J., Westacott, Laura, Aggleton, John P. and O'Sullivan, Michael J.. (2012). Cingulum microstructure predicts cognitive control in older age and mild cognitive impairment. Journal of Neuroscience. 32(49), pp. 17612 - 17619. https://doi.org/10.1523/JNEUROSCI.3299-12.2012
How and how not to correct for CSF-contamination in diffusion MRI
Metzler-Baddeley, Claudia, O'Sullivan, Michael J., Bells, Sonya, Pasternak, Ofer and Jones, Derek Kenton. (2012). How and how not to correct for CSF-contamination in diffusion MRI. NeuroImage. 59(2), pp. 1394 - 1403. https://doi.org/10.1016/j.neuroimage.2011.08.043
White matter microstructural abnormalities in the frontal lobe of adults with antisocial personality disorder
Sundram, Frederick, Deeley, Quinton, Sarkar, Sagari, Daly, Eileen, Latham, Richard, Craig, Michael, Raczek, Malgorzata, Fahy, Tom, Picchioni, Marco, Bailey, A. J., Baron-Cohen, S., Bolton, P. F., Bullmore, E. T., Carrington, S., Chakrabarti, B., Daly, E. M., Deoni, S. C., Ecker, C., Happe, F., ... Murphy, Declan G. M.. (2012). White matter microstructural abnormalities in the frontal lobe of adults with antisocial personality disorder. Cortex. 48(2), pp. 216-229. https://doi.org/10.1016/j.cortex.2011.06.005
Temporal association tracts and the breakdown of episodic memory in mild cognitive impairment
Metzler-Baddeley, Claudia, Hunt, Sarah, Jones, Derek Kenton, Leemans, Alexander, Aggleton, John P. and O'Sullivan, Michael J.. (2012). Temporal association tracts and the breakdown of episodic memory in mild cognitive impairment. Neurology. 79(23), pp. 2233 - 2240. https://doi.org/10.1212/WNL.0b013e31827689e8
Cingulum white matter in young women at risk of depression: The effect of family history and anhedonia
Keedwell, Paul A., Chapman, Rosanna, Christiansen, Kat, Richardson, Heather, Evans, John and Jones, Derek Kenton. (2012). Cingulum white matter in young women at risk of depression: The effect of family history and anhedonia. Biological Psychiatry. 72(4), pp. 296 - 302. https://doi.org/10.1016/j.biopsych.2012.01.022
A systematic review of diffusion tensor imaging findings in sports-related concussion
Gardner, Andrew, Kay-Lambkin, Frances J., Stanwell, Peter, Donnelly, James, Williams, W. Huw, Hiles, Alexandra, Schofield, Peter, Levi, Christopher and Jones, Derek Kenton. (2012). A systematic review of diffusion tensor imaging findings in sports-related concussion. Journal of Neurotrauma. 29(16), pp. 2521 - 2538. https://doi.org/10.1089/neu.2012.2628
Individual differences in brain structure underpin empathizing-systemizing cognitive styles in male adults
Lai, Meng-Chuan, Lombardo, Michael V., Chakrabarti, Bhismadev, Ecker, Christine, Sadek, Susan A., Wheelwright, Sally J., Murphy, Declan G. M., Suckling, John, Bullmore, Edward T., Bailey, A. J., Bolton, P. F., Carrington, S., Daly, E. M., Deoni, S. C., Happé, F., Henty, J., Jezzard, P., Johnston, P., Jones, D. K., ... Baron-Cohen, Simon. (2012). Individual differences in brain structure underpin empathizing-systemizing cognitive styles in male adults. NeuroImage. 61(4), pp. 1347-1354. https://doi.org/10.1016/j.neuroimage.2012.03.018
The influence of complex white matter architecture on the mean diffusivity in diffusion tensor MRI of the human brain
Vos, Sjoerd B., Jones, Derek Kenton, Jeurissen, Ben, Viergever, Max A. and Leemans, Alexander. (2012). The influence of complex white matter architecture on the mean diffusivity in diffusion tensor MRI of the human brain. NeuroImage. 59(3), pp. 2208 - 2216. https://doi.org/10.1016/j.neuroimage.2011.09.086
Motion correction and registration of high b-value diffusion weighted images
Ben-Amitay, Shani, Jones, Derek K. and Assaf, Yaniv. (2012). Motion correction and registration of high b-value diffusion weighted images. Magnetic Resonance in Medicine. 67(6), pp. 1694 - 1702. https://doi.org/10.1002/mrm.23186
Diffusion tensor imaging
Jones, Derek K. and Leemans, Alexander. (2011). Diffusion tensor imaging. In In Modo, Michel and Bulte, Jeff W. M. (Ed.). Magnetic resonance neuroimaging : Methods and protocols pp. 127-144 Humana Press. https://doi.org/10.1007/978-1-61737-992-5_6
Partial volume effect as a hidden covariate in DTI analyses
Vos, Sjoerd B., Jones, Derek Kenton, Viergever, Max A. and Leemans, Alexander. (2011). Partial volume effect as a hidden covariate in DTI analyses. NeuroImage. 55(4), pp. 1566 - 1576. https://doi.org/10.1016/j.neuroimage.2011.01.048
Differential corticospinal tract degeneration in homozygous 'D90A' SOD-1 ALS and sporadic ALS
Blain, C. R. V., Brunton, S., Willia, V. C., Leemans, A., Turner, M. R., Andersen, P. M., Catani, Marco, Stanton, B. R., Ganesalingham, J., Jones, Derek Kenton, Willia, Steven C. R., Leigh, P. N. and Simmons, Andrew. (2011). Differential corticospinal tract degeneration in homozygous 'D90A' SOD-1 ALS and sporadic ALS. Journal of Neurology, Neurosurgery and Psychiatry. 82(8), pp. 843 - 849. https://doi.org/10.1136/jnnp.2010.236018
Spatial and orientational heterogeneity in the statistical sensitivity of skeleton-based analyses of diffusion tensor MR imaging data
Edden, Richard A. and Jones, Derek Kenton. (2011). Spatial and orientational heterogeneity in the statistical sensitivity of skeleton-based analyses of diffusion tensor MR imaging data. Journal of Neuroscience Methods. 201(1), pp. 213 - 219. https://doi.org/10.1016/j.jneumeth.2011.07.025
Frontotemporal connections in episodic memory and aging: A diffusion MRI tractography study
Metzler-Baddeley, Claudia, Jones, Derek Kenton, Belaroussi, Boubakeur, Aggleton, John P. and O'Sullivan, Michael J.. (2011). Frontotemporal connections in episodic memory and aging: A diffusion MRI tractography study. Journal of Neuroscience. 31(37), pp. 13236 - 13245. https://doi.org/10.1523/JNEUROSCI.2317-11.2011
Probabilistic fiber tracking using the residual bootstrap with constrained spherical deconvolution
Jeurissen, Ben, Leemans, Alexander, Jones, Derek Kenton, Tournier, Jacques-Donald and Sijbers, Jan. (2011). Probabilistic fiber tracking using the residual bootstrap with constrained spherical deconvolution. Human Brain Mapping. 32(3), pp. 461 - 479. https://doi.org/10.1002/hbm.21032
Chronic pain in later life: A review of current issues and challenges
Schofield, Pat, Clarke, Amanda, Jones, Derek, Martin, Denis, McNamee, Paul and Smith, Blair. (2011). Chronic pain in later life: A review of current issues and challenges. Aging Health. 7(4), pp. 551 - 556. https://doi.org/10.2217/ahe.11.41